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Massive Data Classification of Neural Responses

Massive Data Classification of Neural Responses
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Author(s): Pedro Tomás (INESC-ID / IST TU Lisbon, Portugal), IST TU Lisbon (INESC-ID / IST TU Lisbon, Portugal), Aleksandar Ilic (INESC-ID / IST TU Lisbon, Portugal)and Leonel Sousa (INESC-ID / IST TU Lisbon, Portugal)
Copyright: 2011
Pages: 21
Source title: Biomedical Diagnostics and Clinical Technologies: Applying High-Performance Cluster and Grid Computing
Source Author(s)/Editor(s): Manuela Pereira (University of Beira Interior, Portugal)and Mario Freire (University of Beira Interior, Portugal)
DOI: 10.4018/978-1-60566-280-0.ch009

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Abstract

When analyzing the neuronal code, neuroscientists usually perform extra-cellular recordings of neuronal responses (spikes). Since the size of the microelectrodes used to perform these recordings is much larger than the size of the cells, responses from multiple neurons are recorded by each micro-electrode. Thus, the obtained response must be classified and evaluated, in order to identify how many neurons were recorded, and to assess which neuron generated each spike. A platform for the mass-classification of neuronal responses is proposed in this chapter, employing data-parallelism for speeding up the classification of neuronal responses. The platform is built in a modular way, supporting multiple web-interfaces, different back-end environments for parallel computing or different algorithms for spike classification. Experimental results on the proposed platform show that even for an unbalanced data set of neuronal responses the execution time was reduced of about 45%. For balanced data sets, the platform may achieve a reduction in execution time equal to the inverse of the number of back-end computational elements.

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